| Director | Vaclav Stankevic |
| Deputy Director | Rima Mickiene |
| Head of Career and Comunication Department | dr. Genute Kalvaitiene |
| Project specialist/Institutional Erasmus+ Coordinator | Indre Mickeviciute |
| Study Department | Sigita Dobrovolskiene |
| Head of Navigation Department | dr. Vytautas Dubra |
| Head of Maritime Engineering Department | Alvydas Nikolajus |
| Head of Port Economics and Management Department | Vilma Locaitiene |
| Head of Library | Rima Stasytiene |
| Head of IT Laboratory | Elena Valioniene |
| Head of the Dormitory | Birute Senkiene |